python main.py Fig.3D_Q0227striatum_4wks_CBE_S103_L001_R1_001.fastq.gz out/Fig.3D_Q0227striatum_4wks_CBE_S103_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0229-Cortex-Untreated-24Wks_S81_L001_R1_001.fastq.gz out/Fig.3D_Q0229-Cortex-Untreated-24Wks_S81_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0229-Striatum-Untreated-24Wks_S82_L001_R1_001.fastq.gz out/Fig.3D_Q0229-Striatum-Untreated-24Wks_S82_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0229-Tail_UT_24wks_S28_L001_R1_001.fastq.gz out/Fig.3D_Q0229-Tail_UT_24wks_S28_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0233-Cortex-Untreated-24Wks_S85_L001_R1_001.fastq.gz out/Fig.3D_Q0233-Cortex-Untreated-24Wks_S85_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0233-Striatum-Untreated-24Wks_S86_L001_R1_001.fastq.gz out/Fig.3D_Q0233-Striatum-Untreated-24Wks_S86_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0233-Tail_UT_24wks_S29_L001_R1_001.fastq.gz out/Fig.3D_Q0233-Tail_UT_24wks_S29_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0235-Cortex-Untreated-24Wks_S89_L001_R1_001.fastq.gz out/Fig.3D_Q0235-Cortex-Untreated-24Wks_S89_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0235-Striatum-Untreated-24Wks_S90_L001_R1_001.fastq.gz out/Fig.3D_Q0235-Striatum-Untreated-24Wks_S90_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0235-Tail_UT_24wks_S30_L001_R1_001.fastq.gz out/Fig.3D_Q0235-Tail_UT_24wks_S30_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0238Cortex_CBE_4wks_S104_L001_R1_001.fastq.gz out/Fig.3D_Q0238Cortex_CBE_4wks_S104_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0238striatum_CBE_4wks_S105_L001_R1_001.fastq.gz out/Fig.3D_Q0238striatum_CBE_4wks_S105_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0251Cortex_CBE_4wks_S107_L001_R1_001.fastq.gz out/Fig.3D_Q0251Cortex_CBE_4wks_S107_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0251striatum_CBE_4wks_S108_L001_R1_001.fastq.gz out/Fig.3D_Q0251striatum_CBE_4wks_S108_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q255-CTX_12wks_CBE_S55_L001_R1_001.fastq.gz out/Fig.3D_Q255-CTX_12wks_CBE_S55_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q255-STR_12wks_CBE_S54_L001_R1_001.fastq.gz out/Fig.3D_Q255-STR_12wks_CBE_S54_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0255tail_12wks_CBE_S177_L001_R1_001.fastq.gz out/Fig.3D_Q0255tail_12wks_CBE_S177_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q257-CTX_12wks_CBE_S57_L001_R1_001.fastq.gz out/Fig.3D_Q257-CTX_12wks_CBE_S57_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q257-STR_12wks_CBE_S56_L001_R1_001.fastq.gz out/Fig.3D_Q257-STR_12wks_CBE_S56_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0257tai_12wks_CBEs_S178_L001_R1_001.fastq.gz out/Fig.3D_Q0257tai_12wks_CBEs_S178_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q265-CTX_24wks_CBE_S46_L001_R1_001.fastq.gz out/Fig.3D_Q265-CTX_24wks_CBE_S46_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q265-STR_24wks_CBE_S45_L001_R1_001.fastq.gz out/Fig.3D_Q265-STR_24wks_CBE_S45_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0265tail_24wks_CBE_S181_L001_R1_001.fastq.gz out/Fig.3D_Q0265tail_24wks_CBE_S181_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q291-CTX_12wks_CBE_S61_L001_R1_001.fastq.gz out/Fig.3D_Q291-CTX_12wks_CBE_S61_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q291-STR_12wks_CBE_S60_L001_R1_001.fastq.gz out/Fig.3D_Q291-STR_12wks_CBE_S60_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0291tail_12wks_CBE_S183_L001_R1_001.fastq.gz out/Fig.3D_Q0291tail_12wks_CBE_S183_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q292-CTX_24wks_CBE_S49_L001_R1_001.fastq.gz out/Fig.3D_Q292-CTX_24wks_CBE_S49_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q292-STR_24wks_CBE_S47_L001_R1_001.fastq.gz out/Fig.3D_Q292-STR_24wks_CBE_S47_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q292tail_24Wks_CBE_S184_L001_R1_001.fastq.gz out/Fig.3D_Q292tail_24Wks_CBE_S184_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0295-ctx_12wks_CBE_S34_L001_R1_001.fastq.gz out/Fig.3D_Q0295-ctx_12wks_CBE_S34_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q295-STR_12wks_CBE_S35_L001_R1_001.fastq.gz out/Fig.3D_Q295-STR_12wks_CBE_S35_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0295tail_12wks_CBE_S185_L001_R1_001.fastq.gz out/Fig.3D_Q0295tail_12wks_CBE_S185_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q296-CTX_12wks_CBE_S37_L001_R1_001.fastq.gz out/Fig.3D_Q296-CTX_12wks_CBE_S37_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q296-STR_12wks_CBE_S36_L001_R1_001.fastq.gz out/Fig.3D_Q296-STR_12wks_CBE_S36_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0296tail_12wks_CBE_S186_L001_R1_001.fastq.gz out/Fig.3D_Q0296tail_12wks_CBE_S186_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q297-CTX_24wks_CBE_S51_L001_R1_001.fastq.gz out/Fig.3D_Q297-CTX_24wks_CBE_S51_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q297-STR_24wks_CBE_S50_L001_R1_001.fastq.gz out/Fig.3D_Q297-STR_24wks_CBE_S50_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0297tail_24wks_CBE_S187_L001_R1_001.fastq.gz out/Fig.3D_Q0297tail_24wks_CBE_S187_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q300-CTX_24wks_CBE_S53_L001_R1_001.fastq.gz out/Fig.3D_Q300-CTX_24wks_CBE_S53_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q300-STR_24wks_CBE_S52_L001_R1_001.fastq.gz out/Fig.3D_Q300-STR_24wks_CBE_S52_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0300tail_24wks_CBE_S188_L001_R1_001.fastq.gz out/Fig.3D_Q0300tail_24wks_CBE_S188_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0330Cortex-Vehicle-12wks_S303_L001_R1_001.fastq.gz out/Fig.3D_Q0330Cortex-Vehicle-12wks_S303_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_q0332-Tail_Vehicle-12wks_S33_L001_R1_001.fastq.gz out/Fig.3D_q0332-Tail_Vehicle-12wks_S33_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0332Cortex-Untreated12-Wks_S307_L001_R1_001.fastq.gz out/Fig.3D_Q0332Cortex-Untreated12-Wks_S307_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0332Striatum-Untreated12-Wks_S308_L001_R1_001.fastq.gz out/Fig.3D_Q0332Striatum-Untreated12-Wks_S308_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0342-Cortex-Untreated12-Wks_S311_L001_R1_001.fastq.gz out/Fig.3D_Q0342-Cortex-Untreated12-Wks_S311_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0342-Striatum-Untreated12-Wks_S312_L001_R1_001.fastq.gz out/Fig.3D_Q0342-Striatum-Untreated12-Wks_S312_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q359-CTX_12wks_CBE_S59_L001_R1_001.fastq.gz out/Fig.3D_Q359-CTX_12wks_CBE_S59_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q359-STR_12wks_CBE_S58_L001_R1_001.fastq.gz out/Fig.3D_Q359-STR_12wks_CBE_S58_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0359tail_12wks_CBE_S189_L001_R1_001.fastq.gz out/Fig.3D_Q0359tail_12wks_CBE_S189_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0361cortex_Vehicle_4wks_S132_L001_R1_001.fastq.gz out/Fig.3D_Q0361cortex_Vehicle_4wks_S132_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0442-ctx_12wks_Vehicle_S32_L001_R1_001.fastq.gz out/Fig.3D_Q0442-ctx_12wks_Vehicle_S32_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0452-ctx_24wks_Vehicle_S22_L001_R1_001.fastq.gz out/Fig.3D_Q0452-ctx_24wks_Vehicle_S22_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0452-str_24wks_Vehicle_S23_L001_R1_001.fastq.gz out/Fig.3D_Q0452-str_24wks_Vehicle_S23_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0452-Tail_24wks_Vehicle_S24_L001_R1_001.fastq.gz out/Fig.3D_Q0452-Tail_24wks_Vehicle_S24_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0456-ctx_24wks_Vehicle_S26_L001_R1_001.fastq.gz out/Fig.3D_Q0456-ctx_24wks_Vehicle_S26_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0456-str_24wks_Vehicle_S27_L001_R1_001.fastq.gz out/Fig.3D_Q0456-str_24wks_Vehicle_S27_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0456-Tail_24wks_Vehicle_S28_L001_R1_001.fastq.gz out/Fig.3D_Q0456-Tail_24wks_Vehicle_S28_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0457-ctx_24wks_CBE_S14_L001_R1_001.fastq.gz out/Fig.3D_Q0457-ctx_24wks_CBE_S14_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0457-str_24wks_CBE_S15_L001_R1_001.fastq.gz out/Fig.3D_Q0457-str_24wks_CBE_S15_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0457-Tail_24wks_CBE_S16_L001_R1_001.fastq.gz out/Fig.3D_Q0457-Tail_24wks_CBE_S16_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0458-ctx_24wks_CBE_S18_L001_R1_001.fastq.gz out/Fig.3D_Q0458-ctx_24wks_CBE_S18_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0458-str_24wks_CBE_S19_L001_R1_001.fastq.gz out/Fig.3D_Q0458-str_24wks_CBE_S19_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0458-Tail_24wks_CBE_S20_L001_R1_001.fastq.gz out/Fig.3D_Q0458-Tail_24wks_CBE_S20_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0462-12wks_vehicle-ctx_S49_L001_R1_001.fastq.gz out/Fig.3D_Q0462-12wks_vehicle-ctx_S49_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0462-str_12wks_Vehicle_S50_L001_R1_001.fastq.gz out/Fig.3D_Q0462-str_12wks_Vehicle_S50_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0462-Tail_12wks_Vehicle_S46_L001_R1_001.fastq.gz out/Fig.3D_Q0462-Tail_12wks_Vehicle_S46_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0463-ctx_24wks_Vehicle_S54_L001_R1_001.fastq.gz out/Fig.3D_Q0463-ctx_24wks_Vehicle_S54_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0463-str_24wks_Vehicle_S55_L001_R1_001.fastq.gz out/Fig.3D_Q0463-str_24wks_Vehicle_S55_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0463-Tail_24wks_Vehicle_S51_L001_R1_001.fastq.gz out/Fig.3D_Q0463-Tail_24wks_Vehicle_S51_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0471-ctx_24wks_CBE_S59_L001_R1_001.fastq.gz out/Fig.3D_Q0471-ctx_24wks_CBE_S59_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0471-str_24wks_CBE_S60_L001_R1_001.fastq.gz out/Fig.3D_Q0471-str_24wks_CBE_S60_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3D_Q0471-Tail_24wks_CBE_S56_L001_R1_001.fastq.gz out/Fig.3D_Q0471-Tail_24wks_CBE_S56_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
